Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs148092871 | chr20:57573601 | C/CAAAA | 2.29E-6 | 175 | 15.95 | 13.75 | 3.43 | KM Plot |
| PAAD | rs148302032 | chr19:49359576 | C/T | 1.25E-12 | 175 | 16.18 | 13.5 | 1.37 | KM Plot |
| PAAD | rs148359245 | chr5:167719591 | G/A | 1.28E-7 | 171 | 15.62 | 12.98 | 3.17 | KM Plot |
| PAAD | rs148420951 | chr2:70450447 | CTTAATTT/C | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs148458260 | chr1:227555529 | C/T | 1.89E-5 | 174 | 15.47 | 17.03 | 3.9 | KM Plot |
| PAAD | rs148540745 | chr1:227443197 | G/GA | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs148626908 | chr12:104739426 | G/GAGTAGTAATTTCAACTAATC | 9.67E-13 | 177 | 1.37 | 15.8 | 15.48 | KM Plot |
| PAAD | rs148786331 | chr11:125598440 | G/GT | 0.00011 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs148877140 | chr7:102839467 | A/C | 5.74E-10 | 171 | 16.28 | 12.2 | 4.1 | KM Plot |
| PAAD | rs149049916 | chr11:125580050 | T/TATC | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs149129195 | chr1:227578819 | C/T | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs149307406 | chr2:217937114 | G/GA | 9.37E-6 | 170 | 15.57 | 17.37 | 5.97 | KM Plot |
| PAAD | rs149516695 | chr17:12872599 | CTCTT/C | 0.000106 | 175 | 16.13 | 11.13 | 7.97 | KM Plot |
| PAAD | rs149536168 | chr1:200526234 | C/T | 0 | 170 | 15.23 | 16.13 | 1.03 | KM Plot |
| PAAD | rs149723934 | chr11:125696452 | CT/C | 6.91E-5 | 174 | 16.03 | 11.6 | 4.1 | KM Plot |